Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SLC28A1O00337 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.5■□□□□ 0.23
SLC28A1O00337 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SLC28A1O00337 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.5■□□□□ 0.23
SLC28A1O00337 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.5■□□□□ 0.23
SLC28A1O00337 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SLC28A1O00337 AP000867.4-201ENST00000641616 219 ntBASIC16.5■□□□□ 0.23
SLC28A1O00337 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SLC28A1O00337 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SLC28A1O00337 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
SLC28A1O00337 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.5■□□□□ 0.23
SLC28A1O00337 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
SLC28A1O00337 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
SLC28A1O00337 IER3-202ENST00000376377 1350 ntBASIC16.5■□□□□ 0.23
SLC28A1O00337 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SLC28A1O00337 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SLC28A1O00337 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SLC28A1O00337 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SLC28A1O00337 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.49■□□□□ 0.23
SLC28A1O00337 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
SLC28A1O00337 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 TNRC18P3-201ENST00000441896 2691 ntBASIC16.49■□□□□ 0.23
SLC28A1O00337 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
SLC28A1O00337 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
SLC28A1O00337 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.49■□□□□ 0.23
SLC28A1O00337 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.49■□□□□ 0.23
SLC28A1O00337 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.49■□□□□ 0.23
SLC28A1O00337 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.49■□□□□ 0.23
SLC28A1O00337 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 AC074051.2-201ENST00000565115 352 ntBASIC16.49■□□□□ 0.23
SLC28A1O00337 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.49■□□□□ 0.23
SLC28A1O00337 AC087388.1-201ENST00000571370 1112 ntBASIC16.49■□□□□ 0.23
SLC28A1O00337 AC114341.1-201ENST00000618070 349 ntBASIC16.49■□□□□ 0.23
SLC28A1O00337 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
SLC28A1O00337 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SLC28A1O00337 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.49■□□□□ 0.23
SLC28A1O00337 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SLC28A1O00337 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.49■□□□□ 0.23
SLC28A1O00337 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SLC28A1O00337 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SLC28A1O00337 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.48■□□□□ 0.23
SLC28A1O00337 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.48■□□□□ 0.23
SLC28A1O00337 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.48■□□□□ 0.23
SLC28A1O00337 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.48■□□□□ 0.23
SLC28A1O00337 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
SLC28A1O00337 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.48■□□□□ 0.23
SLC28A1O00337 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.48■□□□□ 0.23
SLC28A1O00337 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.48■□□□□ 0.23
SLC28A1O00337 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
SLC28A1O00337 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.48■□□□□ 0.23
SLC28A1O00337 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.48■□□□□ 0.23
SLC28A1O00337 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.48■□□□□ 0.23
SLC28A1O00337 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 AL590326.2-201ENST00000625139 305 ntBASIC16.48■□□□□ 0.23
SLC28A1O00337 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.48■□□□□ 0.23
SLC28A1O00337 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.48■□□□□ 0.23
SLC28A1O00337 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SLC28A1O00337 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
SLC28A1O00337 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SLC28A1O00337 UBALD1-205ENST00000590891 2641 ntBASIC16.48■□□□□ 0.23
SLC28A1O00337 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms