Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 FO538757.1-201ENST00000623083 1397 ntBASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 AL512638.1-201ENST00000457493 794 ntBASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 AC109635.5-201ENST00000533593 962 ntBASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 SLC25A39P2-201ENST00000537614 270 ntBASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PCDHGA1Q9Y5H4 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
PCDHGA1Q9Y5H4 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.39■□□□□ 0.22
PCDHGA1Q9Y5H4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 MIR661-201ENST00000384842 89 ntBASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 HMGA1P7-201ENST00000406908 502 ntBASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 TREML5P-201ENST00000421694 576 ntBASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 SPDYE14P-201ENST00000442619 822 ntBASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 IGHV3-42-201ENST00000520410 361 ntBASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 AC027307.3-201ENST00000594262 1100 ntBASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 AL009183.1-201ENST00000603760 355 ntBASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 AL139327.4-201ENST00000612362 153 ntBASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 AC135776.1-201ENST00000319817 2481 ntBASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDHGA1Q9Y5H4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 AC008677.1-201ENST00000519230 1561 ntBASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 UGT1A2P-201ENST00000454886 866 ntBASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 AC069120.2-201ENST00000524091 540 ntBASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms