Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 IFNL4P1-201ENST00000607083 540 ntBASIC17.06■□□□□ 0.32
TREX1Q9NSU2 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TREX1Q9NSU2 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 AL021920.2-201ENST00000624828 1351 ntBASIC17.05■□□□□ 0.32
TREX1Q9NSU2 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 PAWRP1-201ENST00000451083 565 ntBASIC17.05■□□□□ 0.32
TREX1Q9NSU2 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 AC021087.4-201ENST00000563761 564 ntBASIC17.05■□□□□ 0.32
TREX1Q9NSU2 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TREX1Q9NSU2 KRT8P49-201ENST00000604166 1432 ntBASIC17.04■□□□□ 0.32
TREX1Q9NSU2 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 LINC00895-201ENST00000629028 1637 ntBASIC17.04■□□□□ 0.32
TREX1Q9NSU2 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 KRT18P56-201ENST00000507275 550 ntBASIC17.04■□□□□ 0.32
TREX1Q9NSU2 UNC93B7-201ENST00000509439 705 ntBASIC17.04■□□□□ 0.32
TREX1Q9NSU2 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.04■□□□□ 0.32
TREX1Q9NSU2 LINC01711-201ENST00000598340 967 ntBASIC17.04■□□□□ 0.32
TREX1Q9NSU2 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TREX1Q9NSU2 AL603756.1-201ENST00000606511 2163 ntBASIC17.04■□□□□ 0.32
TREX1Q9NSU2 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms