Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 AC004877.2-201ENST00000623941 599 ntBASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 OR6D1P-202ENST00000641007 5290 ntBASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 DNAJB3-202ENST00000449667 1266 ntBASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 KRT19P2-202ENST00000557173 1012 ntBASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAIPQ9BWF2 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 HTR5BP-201ENST00000430851 1154 ntBASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 FAM185BP-201ENST00000443595 716 ntBASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 CXCL1P1-201ENST00000502804 216 ntBASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 AC007064.4-201ENST00000637740 555 ntBASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAIPQ9BWF2 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 ALG1L5P-201ENST00000482043 771 ntBASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRAIPQ9BWF2 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms