Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 PTCHD3P3-201ENST00000403073 906 ntBASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 RPS15P9-201ENST00000494093 319 ntBASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 UNC93B6-202ENST00000528242 690 ntBASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 AF228730.7-201ENST00000641842 219 ntBASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 AC080080.1-201ENST00000625121 2420 ntBASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD1Q96NR3 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 SLC25A1P1-201ENST00000528351 927 ntBASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PTCHD1Q96NR3 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 ZNF259P1-201ENST00000407656 1365 ntBASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 AC104109.2-201ENST00000602919 1418 ntBASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 AC093525.9-201ENST00000624961 1746 ntBASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 AL805961.1-202ENST00000641562 540 ntBASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PTCHD1Q96NR3 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
PTCHD1Q96NR3 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms