Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 DUX4L26-201ENST00000489078 1255 ntBASIC12.87□□□□□ -0.35
LINC00477Q96M19 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 COX5A-202ENST00000562233 441 ntTSL 3 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 COX5A-204ENST00000567270 579 ntTSL 3 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 NDUFV2-AS1-203ENST00000608008 779 ntBASIC12.87□□□□□ -0.35
LINC00477Q96M19 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 STX3-203ENST00000529177 1571 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 CCS-201ENST00000310190 942 ntTSL 5 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 KLF4P1-201ENST00000412782 1185 ntBASIC12.86□□□□□ -0.35
LINC00477Q96M19 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 ABR-204ENST00000543210 1049 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 ABR-217ENST00000572441 563 ntTSL 4 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AC011467.2-201ENST00000598425 242 ntBASIC12.86□□□□□ -0.35
LINC00477Q96M19 AL121672.3-201ENST00000608644 468 ntBASIC12.86□□□□□ -0.35
LINC00477Q96M19 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AD001527.2-201ENST00000622994 785 ntBASIC12.86□□□□□ -0.35
LINC00477Q96M19 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 FLJ38576-201ENST00000623820 2459 ntBASIC12.86□□□□□ -0.35
LINC00477Q96M19 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00477Q96M19 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 AC079328.2-201ENST00000561241 3354 ntBASIC12.86□□□□□ -0.35
LINC00477Q96M19 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00477Q96M19 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00477Q96M19 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
LINC00477Q96M19 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms