Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 AC023141.5-201ENST00000458585 616 ntBASIC20.02■□□□□ 0.8
TRIM47Q96LD4 HLA-J-202ENST00000469281 1241 ntBASIC20.02■□□□□ 0.8
TRIM47Q96LD4 AC069262.1-201ENST00000539058 672 ntBASIC20.02■□□□□ 0.8
TRIM47Q96LD4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 AC093520.2-201ENST00000561830 333 ntBASIC20.02■□□□□ 0.8
TRIM47Q96LD4 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 GGTLC5P-201ENST00000617623 998 ntBASIC20.02■□□□□ 0.8
TRIM47Q96LD4 REXO1L3P-201ENST00000622202 1288 ntBASIC20.02■□□□□ 0.8
TRIM47Q96LD4 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM47Q96LD4 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.02■□□□□ 0.79
TRIM47Q96LD4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TRIM47Q96LD4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.02■□□□□ 0.79
TRIM47Q96LD4 AL121761.2-201ENST00000598007 1648 ntBASIC20.02■□□□□ 0.79
TRIM47Q96LD4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.02■□□□□ 0.79
TRIM47Q96LD4 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 AF228730.6-201ENST00000641497 218 ntBASIC20.01■□□□□ 0.79
TRIM47Q96LD4 AC084121.3-201ENST00000641716 218 ntBASIC20.01■□□□□ 0.79
TRIM47Q96LD4 AC105233.6-201ENST00000642093 218 ntBASIC20.01■□□□□ 0.79
TRIM47Q96LD4 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 KRT18P55-202ENST00000578578 1546 ntBASIC20.01■□□□□ 0.79
TRIM47Q96LD4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM47Q96LD4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC20■□□□□ 0.79
TRIM47Q96LD4 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC20■□□□□ 0.79
TRIM47Q96LD4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC20■□□□□ 0.79
TRIM47Q96LD4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC20■□□□□ 0.79
TRIM47Q96LD4 FAM86GP-201ENST00000448322 971 ntBASIC20■□□□□ 0.79
TRIM47Q96LD4 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20■□□□□ 0.79
TRIM47Q96LD4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC20■□□□□ 0.79
TRIM47Q96LD4 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
TRIM47Q96LD4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC20■□□□□ 0.79
TRIM47Q96LD4 PUDP-206ENST00000540122 825 ntTSL 2 BASIC20■□□□□ 0.79
TRIM47Q96LD4 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
TRIM47Q96LD4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC20■□□□□ 0.79
TRIM47Q96LD4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20■□□□□ 0.79
TRIM47Q96LD4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC20■□□□□ 0.79
TRIM47Q96LD4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20■□□□□ 0.79
TRIM47Q96LD4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20■□□□□ 0.79
TRIM47Q96LD4 AC068137.2-201ENST00000605408 478 ntBASIC20■□□□□ 0.79
TRIM47Q96LD4 AC019129.2-201ENST00000609837 1235 ntBASIC20■□□□□ 0.79
TRIM47Q96LD4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20■□□□□ 0.79
TRIM47Q96LD4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20■□□□□ 0.79
TRIM47Q96LD4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
TRIM47Q96LD4 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC20■□□□□ 0.79
TRIM47Q96LD4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
TRIM47Q96LD4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM47Q96LD4 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
TRIM47Q96LD4 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM47Q96LD4 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms