Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 CROCCP1-201ENST00000426910 5675 ntBASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 MIR574-201ENST00000385209 96 ntBASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 STK19B-204ENST00000512515 211 ntBASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 STK25P1-201ENST00000585406 838 ntBASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.43■□□□□ 0.86
CHMP4CQ96CF2 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 AL020989.1-201ENST00000422979 469 ntBASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 AC107918.4-202ENST00000641623 219 ntBASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4CQ96CF2 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 RPS2P28-201ENST00000314255 741 ntBASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 RNA5SP415-201ENST00000517246 115 ntBASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 AC008735.5-201ENST00000623544 497 ntBASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 AC117500.6-201ENST00000624871 588 ntBASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.41■□□□□ 0.86
CHMP4CQ96CF2 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms