Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 OR8S1-201ENST00000310194 1080 ntBASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 PIN1P1-201ENST00000412108 996 ntBASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 MRPS18AP1-201ENST00000414458 589 ntBASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 NME2P1-201ENST00000426182 414 ntBASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 AC007274.1-201ENST00000439805 662 ntBASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 AL596325.1-201ENST00000563991 1082 ntBASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 SPDYE22P-201ENST00000582158 798 ntBASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 AC027307.2-201ENST00000591252 911 ntBASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SLC44A3Q8N4M1 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 LINC01451-201ENST00000623792 534 ntBASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 AL138781.2-201ENST00000617896 1843 ntBASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SLC44A3Q8N4M1 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 AC027369.6-201ENST00000525520 931 ntBASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 AL359881.2-201ENST00000602973 570 ntBASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SLC44A3Q8N4M1 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms