Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
FOXA3P55318 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA3P55318 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC12.93□□□□□ -0.34
FOXA3P55318 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA3P55318 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC12.93□□□□□ -0.34
FOXA3P55318 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC12.92□□□□□ -0.34
FOXA3P55318 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
FOXA3P55318 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
FOXA3P55318 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
FOXA3P55318 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
FOXA3P55318 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
FOXA3P55318 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
FOXA3P55318 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC12.92□□□□□ -0.34
FOXA3P55318 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
FOXA3P55318 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC12.92□□□□□ -0.34
FOXA3P55318 AC116562.2-201ENST00000507042 360 ntBASIC12.92□□□□□ -0.34
FOXA3P55318 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC12.92□□□□□ -0.34
FOXA3P55318 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC12.92□□□□□ -0.34
FOXA3P55318 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC12.92□□□□□ -0.34
FOXA3P55318 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC12.92□□□□□ -0.34
FOXA3P55318 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC12.92□□□□□ -0.34
FOXA3P55318 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 CYGB-204ENST00000589342 815 ntTSL 3 BASIC12.92□□□□□ -0.34
FOXA3P55318 AC104771.1-201ENST00000603335 964 ntBASIC12.92□□□□□ -0.34
FOXA3P55318 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC12.92□□□□□ -0.34
FOXA3P55318 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
FOXA3P55318 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC12.92□□□□□ -0.34
FOXA3P55318 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC12.92□□□□□ -0.34
FOXA3P55318 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
FOXA3P55318 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
FOXA3P55318 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
FOXA3P55318 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
FOXA3P55318 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
FOXA3P55318 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC12.91□□□□□ -0.34
FOXA3P55318 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.91□□□□□ -0.34
FOXA3P55318 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC12.91□□□□□ -0.34
FOXA3P55318 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
FOXA3P55318 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 AC097488.1-201ENST00000507834 756 ntBASIC12.91□□□□□ -0.34
FOXA3P55318 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC12.91□□□□□ -0.34
FOXA3P55318 AL353719.1-201ENST00000566847 864 ntBASIC12.91□□□□□ -0.34
FOXA3P55318 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC12.91□□□□□ -0.34
FOXA3P55318 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 AL365203.3-201ENST00000609742 2057 ntBASIC12.91□□□□□ -0.34
FOXA3P55318 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC12.91□□□□□ -0.34
FOXA3P55318 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.91□□□□□ -0.34
FOXA3P55318 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
FOXA3P55318 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
FOXA3P55318 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms