Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 FAM220BP-201ENST00000377689 816 ntBASIC21.08■□□□□ 0.97
NUP98P52948 IGHV3-62-201ENST00000520057 340 ntBASIC21.08■□□□□ 0.97
NUP98P52948 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUP98P52948 BANF1P1-201ENST00000553684 263 ntBASIC21.08■□□□□ 0.97
NUP98P52948 MIR4745-201ENST00000577608 62 ntBASIC21.08■□□□□ 0.97
NUP98P52948 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC21.08■□□□□ 0.97
NUP98P52948 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC21.08■□□□□ 0.97
NUP98P52948 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUP98P52948 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUP98P52948 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
NUP98P52948 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUP98P52948 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.08■□□□□ 0.97
NUP98P52948 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUP98P52948 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
NUP98P52948 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
NUP98P52948 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NUP98P52948 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NUP98P52948 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
NUP98P52948 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.08■□□□□ 0.96
NUP98P52948 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC21.08■□□□□ 0.96
NUP98P52948 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.08■□□□□ 0.96
NUP98P52948 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
NUP98P52948 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
NUP98P52948 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC21.08■□□□□ 0.96
NUP98P52948 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
NUP98P52948 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.07■□□□□ 0.96
NUP98P52948 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
NUP98P52948 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC21.07■□□□□ 0.96
NUP98P52948 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC21.07■□□□□ 0.96
NUP98P52948 RNA5SP421-201ENST00000516864 134 ntBASIC21.07■□□□□ 0.96
NUP98P52948 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC21.07■□□□□ 0.96
NUP98P52948 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 AL590560.3-201ENST00000623350 461 ntBASIC21.07■□□□□ 0.96
NUP98P52948 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 SLC9A3P2-201ENST00000447821 2021 ntBASIC21.07■□□□□ 0.96
NUP98P52948 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC21.07■□□□□ 0.96
NUP98P52948 RHBDF1P1-201ENST00000427504 1941 ntBASIC21.07■□□□□ 0.96
NUP98P52948 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 TDG-209ENST00000544861 1387 ntTSL 2 BASIC21.07■□□□□ 0.96
NUP98P52948 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUP98P52948 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
NUP98P52948 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.06■□□□□ 0.96
NUP98P52948 MIR346-201ENST00000362234 95 ntBASIC21.06■□□□□ 0.96
NUP98P52948 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC21.06■□□□□ 0.96
NUP98P52948 PRR29-209ENST00000582540 967 ntTSL 2 BASIC21.06■□□□□ 0.96
NUP98P52948 LINC02560-201ENST00000596379 459 ntBASIC21.06■□□□□ 0.96
NUP98P52948 CROCCP2-202ENST00000412962 2773 ntBASIC21.06■□□□□ 0.96
NUP98P52948 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
NUP98P52948 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
NUP98P52948 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.06■□□□□ 0.96
NUP98P52948 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC21.06■□□□□ 0.96
NUP98P52948 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
NUP98P52948 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC21.06■□□□□ 0.96
NUP98P52948 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC21.06■□□□□ 0.96
NUP98P52948 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
NUP98P52948 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.06■□□□□ 0.96
NUP98P52948 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC21.06■□□□□ 0.96
NUP98P52948 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUP98P52948 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.05■□□□□ 0.96
NUP98P52948 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
NUP98P52948 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUP98P52948 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NUP98P52948 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC21.05■□□□□ 0.96
NUP98P52948 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUP98P52948 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUP98P52948 FST-202ENST00000396947 2538 ntTSL 5 BASIC21.05■□□□□ 0.96
NUP98P52948 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC21.05■□□□□ 0.96
NUP98P52948 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NUP98P52948 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NUP98P52948 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NUP98P52948 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC21.05■□□□□ 0.96
NUP98P52948 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUP98P52948 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC21.05■□□□□ 0.96
NUP98P52948 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NUP98P52948 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NUP98P52948 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NUP98P52948 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms