Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD3P31249 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
HOXD3P31249 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
HOXD3P31249 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD3P31249 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
HOXD3P31249 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
HOXD3P31249 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD3P31249 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD3P31249 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC13.27□□□□□ -0.28
HOXD3P31249 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD3P31249 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD3P31249 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD3P31249 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD3P31249 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD3P31249 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD3P31249 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD3P31249 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXD3P31249 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
HOXD3P31249 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXD3P31249 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXD3P31249 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD3P31249 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXD3P31249 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD3P31249 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXD3P31249 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXD3P31249 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD3P31249 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.29
HOXD3P31249 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD3P31249 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD3P31249 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXD3P31249 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXD3P31249 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HOXD3P31249 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD3P31249 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
HOXD3P31249 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD3P31249 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
HOXD3P31249 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXD3P31249 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD3P31249 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXD3P31249 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC13.26□□□□□ -0.29
HOXD3P31249 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.26□□□□□ -0.29
HOXD3P31249 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 CRYGEP-201ENST00000412192 528 ntBASIC13.26□□□□□ -0.29
HOXD3P31249 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC13.26□□□□□ -0.29
HOXD3P31249 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
HOXD3P31249 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC13.26□□□□□ -0.29
HOXD3P31249 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC13.26□□□□□ -0.29
HOXD3P31249 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXD3P31249 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXD3P31249 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HOXD3P31249 AC018845.2-201ENST00000568326 409 ntBASIC13.26□□□□□ -0.29
HOXD3P31249 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HOXD3P31249 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXD3P31249 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 AC006504.4-201ENST00000592118 1568 ntBASIC13.26□□□□□ -0.29
HOXD3P31249 AL353135.1-201ENST00000606729 504 ntBASIC13.26□□□□□ -0.29
HOXD3P31249 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC13.26□□□□□ -0.29
HOXD3P31249 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXD3P31249 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HOXD3P31249 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 AC005332.8-201ENST00000622750 2735 ntBASIC13.26□□□□□ -0.29
HOXD3P31249 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD3P31249 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC13.26□□□□□ -0.29
HOXD3P31249 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXD3P31249 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC13.25□□□□□ -0.29
HOXD3P31249 LINC00896-202ENST00000609602 2128 ntBASIC13.25□□□□□ -0.29
HOXD3P31249 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HOXD3P31249 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HOXD3P31249 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.25□□□□□ -0.29
HOXD3P31249 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms