Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
COL4A5P29400 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.27■□□□□ 0.84
COL4A5P29400 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A5P29400 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.27■□□□□ 0.84
COL4A5P29400 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.27■□□□□ 0.84
COL4A5P29400 AC119751.2-201ENST00000504529 210 ntBASIC20.27■□□□□ 0.84
COL4A5P29400 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.27■□□□□ 0.84
COL4A5P29400 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.27■□□□□ 0.84
COL4A5P29400 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A5P29400 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.27■□□□□ 0.84
COL4A5P29400 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A5P29400 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC20.27■□□□□ 0.84
COL4A5P29400 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A5P29400 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.27■□□□□ 0.84
COL4A5P29400 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL4A5P29400 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC20.27■□□□□ 0.83
COL4A5P29400 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL4A5P29400 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
COL4A5P29400 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A5P29400 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
COL4A5P29400 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A5P29400 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
COL4A5P29400 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A5P29400 CDK2AP2P3-201ENST00000422476 372 ntBASIC20.26■□□□□ 0.83
COL4A5P29400 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A5P29400 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL4A5P29400 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL4A5P29400 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A5P29400 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
COL4A5P29400 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A5P29400 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
COL4A5P29400 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 AC112492.5-201ENST00000421897 457 ntBASIC20.26■□□□□ 0.83
COL4A5P29400 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL4A5P29400 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 AL512361.1-201ENST00000554200 418 ntBASIC20.26■□□□□ 0.83
COL4A5P29400 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A5P29400 CHCHD2P3-201ENST00000603038 451 ntBASIC20.26■□□□□ 0.83
COL4A5P29400 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A5P29400 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A5P29400 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
COL4A5P29400 CETN4P-206ENST00000642099 2168 ntBASIC20.25■□□□□ 0.83
COL4A5P29400 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
COL4A5P29400 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A5P29400 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.25■□□□□ 0.83
COL4A5P29400 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.25■□□□□ 0.83
COL4A5P29400 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A5P29400 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A5P29400 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A5P29400 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A5P29400 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
COL4A5P29400 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC20.25■□□□□ 0.83
COL4A5P29400 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A5P29400 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
COL4A5P29400 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A5P29400 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A5P29400 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.25■□□□□ 0.83
COL4A5P29400 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.25■□□□□ 0.83
COL4A5P29400 MTND6P24-201ENST00000440466 518 ntBASIC20.25■□□□□ 0.83
COL4A5P29400 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.25■□□□□ 0.83
COL4A5P29400 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC20.25■□□□□ 0.83
COL4A5P29400 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
COL4A5P29400 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.25■□□□□ 0.83
COL4A5P29400 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.24■□□□□ 0.83
COL4A5P29400 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.24■□□□□ 0.83
COL4A5P29400 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A5P29400 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A5P29400 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.24■□□□□ 0.83
COL4A5P29400 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A5P29400 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.24■□□□□ 0.83
COL4A5P29400 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.24■□□□□ 0.83
COL4A5P29400 ZNF890P-202ENST00000530367 1156 ntBASIC20.24■□□□□ 0.83
COL4A5P29400 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.24■□□□□ 0.83
COL4A5P29400 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.24■□□□□ 0.83
COL4A5P29400 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A5P29400 AC017083.2-201ENST00000608069 979 ntBASIC20.24■□□□□ 0.83
COL4A5P29400 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL4A5P29400 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A5P29400 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A5P29400 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A5P29400 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A5P29400 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A5P29400 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms