Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.51■□□□□ 0.39
VCANP13611 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.51■□□□□ 0.39
VCANP13611 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.5■□□□□ 0.39
VCANP13611 AC234644.1-201ENST00000406065 370 ntBASIC17.5■□□□□ 0.39
VCANP13611 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.5■□□□□ 0.39
VCANP13611 DOC2GP-202ENST00000514950 1163 ntBASIC17.5■□□□□ 0.39
VCANP13611 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.5■□□□□ 0.39
VCANP13611 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.5■□□□□ 0.39
VCANP13611 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
VCANP13611 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCANP13611 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VCANP13611 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.5■□□□□ 0.39
VCANP13611 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VCANP13611 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.5■□□□□ 0.39
VCANP13611 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
VCANP13611 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.5■□□□□ 0.39
VCANP13611 AC098850.1-201ENST00000419919 790 ntBASIC17.5■□□□□ 0.39
VCANP13611 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.5■□□□□ 0.39
VCANP13611 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.5■□□□□ 0.39
VCANP13611 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.5■□□□□ 0.39
VCANP13611 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.5■□□□□ 0.39
VCANP13611 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCANP13611 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCANP13611 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.5■□□□□ 0.39
VCANP13611 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCANP13611 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.5■□□□□ 0.39
VCANP13611 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
VCANP13611 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.49■□□□□ 0.39
VCANP13611 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 IGF1-203ENST00000392904 761 ntTSL 5 BASIC17.49■□□□□ 0.39
VCANP13611 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.49■□□□□ 0.39
VCANP13611 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.49■□□□□ 0.39
VCANP13611 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.49■□□□□ 0.39
VCANP13611 AL118558.3-201ENST00000607414 1079 ntBASIC17.49■□□□□ 0.39
VCANP13611 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.49■□□□□ 0.39
VCANP13611 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.49■□□□□ 0.39
VCANP13611 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.49■□□□□ 0.39
VCANP13611 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
VCANP13611 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.49■□□□□ 0.39
VCANP13611 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VCANP13611 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCANP13611 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.49■□□□□ 0.39
VCANP13611 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.49■□□□□ 0.39
VCANP13611 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.48■□□□□ 0.39
VCANP13611 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.48■□□□□ 0.39
VCANP13611 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VCANP13611 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 AL138918.1-201ENST00000568306 659 ntBASIC17.48■□□□□ 0.39
VCANP13611 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.48■□□□□ 0.39
VCANP13611 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.48■□□□□ 0.39
VCANP13611 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.48■□□□□ 0.39
VCANP13611 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 RPL37AP1-201ENST00000412502 279 ntBASIC17.48■□□□□ 0.39
VCANP13611 AL080243.2-201ENST00000418783 582 ntBASIC17.48■□□□□ 0.39
VCANP13611 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.48■□□□□ 0.39
VCANP13611 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.48■□□□□ 0.39
VCANP13611 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.48■□□□□ 0.39
VCANP13611 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.48■□□□□ 0.39
VCANP13611 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.48■□□□□ 0.39
VCANP13611 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VCANP13611 AC025048.3-201ENST00000590609 569 ntBASIC17.48■□□□□ 0.39
VCANP13611 MIR7845-201ENST00000618396 99 ntBASIC17.48■□□□□ 0.39
VCANP13611 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.48■□□□□ 0.39
VCANP13611 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VCANP13611 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
VCANP13611 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VCANP13611 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.47■□□□□ 0.39
VCANP13611 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms