Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.96■□□□□ 0.31
COL6A2P12110 PMPCAP1-201ENST00000508114 1576 ntBASIC16.96■□□□□ 0.31
COL6A2P12110 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.96■□□□□ 0.31
COL6A2P12110 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
COL6A2P12110 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A2P12110 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A2P12110 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A2P12110 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A2P12110 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A2P12110 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.96■□□□□ 0.31
COL6A2P12110 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL6A2P12110 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
COL6A2P12110 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL6A2P12110 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL6A2P12110 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL6A2P12110 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.96■□□□□ 0.3
COL6A2P12110 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL6A2P12110 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.96■□□□□ 0.3
COL6A2P12110 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
COL6A2P12110 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A2P12110 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.95■□□□□ 0.3
COL6A2P12110 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
COL6A2P12110 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
COL6A2P12110 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 AC016734.2-201ENST00000624325 1377 ntBASIC16.95■□□□□ 0.3
COL6A2P12110 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
COL6A2P12110 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.95■□□□□ 0.3
COL6A2P12110 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A2P12110 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A2P12110 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A2P12110 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.95■□□□□ 0.3
COL6A2P12110 RN7SL850P-201ENST00000579959 291 ntBASIC16.95■□□□□ 0.3
COL6A2P12110 AP005901.3-202ENST00000581653 237 ntBASIC16.95■□□□□ 0.3
COL6A2P12110 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.95■□□□□ 0.3
COL6A2P12110 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
COL6A2P12110 INTS4P1-201ENST00000438455 1935 ntBASIC16.95■□□□□ 0.3
COL6A2P12110 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 PCDHB17P-201ENST00000539533 2393 ntBASIC16.95■□□□□ 0.3
COL6A2P12110 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
COL6A2P12110 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A2P12110 DOC2GP-204ENST00000639052 2548 ntBASIC16.95■□□□□ 0.3
COL6A2P12110 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.95■□□□□ 0.3
COL6A2P12110 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A2P12110 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A2P12110 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A2P12110 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A2P12110 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A2P12110 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A2P12110 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 AC233702.3-201ENST00000578656 1387 ntBASIC16.94■□□□□ 0.3
COL6A2P12110 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A2P12110 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
COL6A2P12110 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL6A2P12110 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A2P12110 RCN1P1-201ENST00000400413 996 ntBASIC16.94■□□□□ 0.3
COL6A2P12110 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL6A2P12110 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 SIGLEC30P-201ENST00000455569 941 ntBASIC16.94■□□□□ 0.3
COL6A2P12110 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A2P12110 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A2P12110 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.94■□□□□ 0.3
COL6A2P12110 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A2P12110 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A2P12110 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A2P12110 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A2P12110 AC092850.2-201ENST00000623821 2697 ntBASIC16.93■□□□□ 0.3
COL6A2P12110 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A2P12110 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
COL6A2P12110 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
COL6A2P12110 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A2P12110 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A2P12110 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A2P12110 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A2P12110 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A2P12110 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
COL6A2P12110 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A2P12110 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
COL6A2P12110 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A2P12110 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A2P12110 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A2P12110 AL031133.1-201ENST00000406807 723 ntBASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms