Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.54■□□□□ 0.08
FREM3P0C091 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.54■□□□□ 0.08
FREM3P0C091 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.54■□□□□ 0.08
FREM3P0C091 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.54■□□□□ 0.08
FREM3P0C091 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
FREM3P0C091 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
FREM3P0C091 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.54■□□□□ 0.08
FREM3P0C091 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
FREM3P0C091 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.54■□□□□ 0.08
FREM3P0C091 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 AC129492.6-201ENST00000611383 1305 ntBASIC15.54■□□□□ 0.08
FREM3P0C091 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
FREM3P0C091 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.53■□□□□ 0.08
FREM3P0C091 UPF3AP3-201ENST00000420996 769 ntBASIC15.53■□□□□ 0.08
FREM3P0C091 RPS8P6-201ENST00000426177 609 ntBASIC15.53■□□□□ 0.08
FREM3P0C091 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
FREM3P0C091 RNA5SP416-201ENST00000516838 111 ntBASIC15.53■□□□□ 0.08
FREM3P0C091 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 AL023806.1-201ENST00000603994 1649 ntBASIC15.53■□□□□ 0.08
FREM3P0C091 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.53■□□□□ 0.08
FREM3P0C091 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
FREM3P0C091 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.53■□□□□ 0.08
FREM3P0C091 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.53■□□□□ 0.08
FREM3P0C091 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.53■□□□□ 0.08
FREM3P0C091 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.53■□□□□ 0.08
FREM3P0C091 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.53■□□□□ 0.08
FREM3P0C091 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.53■□□□□ 0.08
FREM3P0C091 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.53■□□□□ 0.08
FREM3P0C091 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.53■□□□□ 0.08
FREM3P0C091 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
FREM3P0C091 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FREM3P0C091 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.53■□□□□ 0.08
FREM3P0C091 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.53■□□□□ 0.08
FREM3P0C091 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
FREM3P0C091 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FREM3P0C091 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FREM3P0C091 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
FREM3P0C091 RHOQP3-201ENST00000437982 621 ntBASIC15.52■□□□□ 0.08
FREM3P0C091 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.52■□□□□ 0.08
FREM3P0C091 AC040169.1-201ENST00000565382 521 ntBASIC15.52■□□□□ 0.08
FREM3P0C091 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.52■□□□□ 0.08
FREM3P0C091 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.52■□□□□ 0.08
FREM3P0C091 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FREM3P0C091 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FREM3P0C091 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FREM3P0C091 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FREM3P0C091 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FREM3P0C091 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FREM3P0C091 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
FREM3P0C091 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FREM3P0C091 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
FREM3P0C091 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.52■□□□□ 0.07
FREM3P0C091 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
FREM3P0C091 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.52■□□□□ 0.07
FREM3P0C091 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
FREM3P0C091 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.52■□□□□ 0.07
FREM3P0C091 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 MCCD1P2-201ENST00000423228 335 ntBASIC15.52■□□□□ 0.07
FREM3P0C091 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
FREM3P0C091 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.52■□□□□ 0.07
FREM3P0C091 AC004790.2-201ENST00000623588 572 ntBASIC15.52■□□□□ 0.07
FREM3P0C091 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
FREM3P0C091 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
FREM3P0C091 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
FREM3P0C091 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FREM3P0C091 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
FREM3P0C091 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.51■□□□□ 0.07
FREM3P0C091 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FREM3P0C091 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms