Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 AC060834.1-201ENST00000443027 2032 ntBASIC16.14■□□□□ 0.17
LDB3O75112 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.14■□□□□ 0.17
LDB3O75112 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LDB3O75112 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.14■□□□□ 0.17
LDB3O75112 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
LDB3O75112 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.14■□□□□ 0.17
LDB3O75112 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LDB3O75112 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 PTCHD3P3-201ENST00000403073 906 ntBASIC16.13■□□□□ 0.17
LDB3O75112 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.13■□□□□ 0.17
LDB3O75112 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.13■□□□□ 0.17
LDB3O75112 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 AC093909.1-201ENST00000504731 1122 ntBASIC16.13■□□□□ 0.17
LDB3O75112 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LDB3O75112 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.13■□□□□ 0.17
LDB3O75112 AL356488.2-201ENST00000602755 427 ntBASIC16.13■□□□□ 0.17
LDB3O75112 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.13■□□□□ 0.17
LDB3O75112 MIR1199-201ENST00000621445 119 ntBASIC16.13■□□□□ 0.17
LDB3O75112 AC116407.3-201ENST00000623905 1129 ntBASIC16.13■□□□□ 0.17
LDB3O75112 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.13■□□□□ 0.17
LDB3O75112 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB3O75112 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LDB3O75112 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
LDB3O75112 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LDB3O75112 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.12■□□□□ 0.17
LDB3O75112 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB3O75112 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB3O75112 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.12■□□□□ 0.17
LDB3O75112 AC136632.2-201ENST00000512891 861 ntBASIC16.12■□□□□ 0.17
LDB3O75112 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.12■□□□□ 0.17
LDB3O75112 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
LDB3O75112 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB3O75112 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB3O75112 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.12■□□□□ 0.17
LDB3O75112 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB3O75112 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 OR6D1P-203ENST00000641209 4860 ntBASIC16.12■□□□□ 0.17
LDB3O75112 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LDB3O75112 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 AC243591.1-201ENST00000452967 1364 ntBASIC16.12■□□□□ 0.17
LDB3O75112 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB3O75112 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
LDB3O75112 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB3O75112 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.11■□□□□ 0.17
LDB3O75112 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LDB3O75112 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 AC092068.3-201ENST00000587894 2016 ntBASIC16.11■□□□□ 0.17
LDB3O75112 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB3O75112 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms