Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.72■□□□□ 0.27
SDC3O75056 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.72■□□□□ 0.27
SDC3O75056 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.72■□□□□ 0.27
SDC3O75056 LINC00628-201ENST00000628516 1289 ntBASIC16.72■□□□□ 0.27
SDC3O75056 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SDC3O75056 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.72■□□□□ 0.27
SDC3O75056 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.72■□□□□ 0.27
SDC3O75056 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SDC3O75056 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.72■□□□□ 0.27
SDC3O75056 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.71■□□□□ 0.27
SDC3O75056 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SDC3O75056 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
SDC3O75056 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
SDC3O75056 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
SDC3O75056 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.71■□□□□ 0.27
SDC3O75056 AL355306.1-201ENST00000415580 579 ntBASIC16.71■□□□□ 0.27
SDC3O75056 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.71■□□□□ 0.27
SDC3O75056 AC107918.2-201ENST00000530817 355 ntBASIC16.71■□□□□ 0.27
SDC3O75056 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 AC099522.2-201ENST00000607001 744 ntBASIC16.71■□□□□ 0.27
SDC3O75056 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
SDC3O75056 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SDC3O75056 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.71■□□□□ 0.27
SDC3O75056 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.71■□□□□ 0.26
SDC3O75056 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
SDC3O75056 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SDC3O75056 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.7■□□□□ 0.26
SDC3O75056 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
SDC3O75056 NOC2LP1-202ENST00000452600 2235 ntBASIC16.7■□□□□ 0.26
SDC3O75056 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SDC3O75056 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.7■□□□□ 0.26
SDC3O75056 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 AL355312.1-201ENST00000407115 2176 ntBASIC16.7■□□□□ 0.26
SDC3O75056 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.7■□□□□ 0.26
SDC3O75056 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 AL671277.1-201ENST00000429656 993 ntBASIC16.7■□□□□ 0.26
SDC3O75056 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.7■□□□□ 0.26
SDC3O75056 HLA-J-203ENST00000494367 1087 ntBASIC16.7■□□□□ 0.26
SDC3O75056 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
SDC3O75056 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.7■□□□□ 0.26
SDC3O75056 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.7■□□□□ 0.26
SDC3O75056 KRT8P48-201ENST00000515599 1220 ntBASIC16.7■□□□□ 0.26
SDC3O75056 AC093520.2-201ENST00000561830 333 ntBASIC16.7■□□□□ 0.26
SDC3O75056 AC025678.2-201ENST00000562061 970 ntBASIC16.7■□□□□ 0.26
SDC3O75056 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
SDC3O75056 AC026120.1-201ENST00000611536 926 ntBASIC16.7■□□□□ 0.26
SDC3O75056 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
SDC3O75056 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.7■□□□□ 0.26
SDC3O75056 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.7■□□□□ 0.26
SDC3O75056 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.7■□□□□ 0.26
SDC3O75056 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SDC3O75056 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms