Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 RNF216P1-203ENST00000404404 2427 ntBASIC17.12■□□□□ 0.33
LDB2O43679 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LDB2O43679 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB2O43679 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB2O43679 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
LDB2O43679 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB2O43679 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LDB2O43679 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LDB2O43679 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LDB2O43679 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.12■□□□□ 0.33
LDB2O43679 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB2O43679 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LDB2O43679 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 PCDHB17P-201ENST00000539533 2393 ntBASIC17.11■□□□□ 0.33
LDB2O43679 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.11■□□□□ 0.33
LDB2O43679 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LDB2O43679 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.11■□□□□ 0.33
LDB2O43679 PTCHD3P3-201ENST00000403073 906 ntBASIC17.11■□□□□ 0.33
LDB2O43679 ELK2BP-201ENST00000415014 1224 ntBASIC17.11■□□□□ 0.33
LDB2O43679 KRT18P27-201ENST00000427733 1299 ntBASIC17.11■□□□□ 0.33
LDB2O43679 PAWRP1-201ENST00000451083 565 ntBASIC17.11■□□□□ 0.33
LDB2O43679 AC073648.2-201ENST00000510116 352 ntBASIC17.11■□□□□ 0.33
LDB2O43679 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LDB2O43679 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.11■□□□□ 0.33
LDB2O43679 AC104692.2-201ENST00000603054 253 ntBASIC17.11■□□□□ 0.33
LDB2O43679 AL031008.1-201ENST00000619963 541 ntBASIC17.11■□□□□ 0.33
LDB2O43679 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
LDB2O43679 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.11■□□□□ 0.33
LDB2O43679 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.11■□□□□ 0.33
LDB2O43679 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
LDB2O43679 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
LDB2O43679 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB2O43679 PKD1P1-201ENST00000458669 6805 ntBASIC17.1■□□□□ 0.33
LDB2O43679 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LDB2O43679 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LDB2O43679 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB2O43679 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB2O43679 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB2O43679 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 AC078925.2-201ENST00000624013 1973 ntBASIC17.1■□□□□ 0.33
LDB2O43679 AC073621.1-201ENST00000392730 636 ntBASIC17.1■□□□□ 0.33
LDB2O43679 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.1■□□□□ 0.33
LDB2O43679 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB2O43679 OR7E14P-202ENST00000530490 1290 ntBASIC17.1■□□□□ 0.33
LDB2O43679 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB2O43679 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.1■□□□□ 0.33
LDB2O43679 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.1■□□□□ 0.33
LDB2O43679 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
LDB2O43679 AC006557.2-201ENST00000592985 1240 ntBASIC17.1■□□□□ 0.33
LDB2O43679 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.1■□□□□ 0.33
LDB2O43679 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB2O43679 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.1■□□□□ 0.33
LDB2O43679 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LDB2O43679 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
LDB2O43679 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LDB2O43679 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB2O43679 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB2O43679 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB2O43679 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
LDB2O43679 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
LDB2O43679 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
LDB2O43679 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.09■□□□□ 0.33
LDB2O43679 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.09■□□□□ 0.33
LDB2O43679 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.09■□□□□ 0.33
LDB2O43679 KRT18P67-201ENST00000432816 1264 ntBASIC17.09■□□□□ 0.33
LDB2O43679 FAAHP1-202ENST00000446499 1238 ntBASIC17.09■□□□□ 0.33
LDB2O43679 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.09■□□□□ 0.33
LDB2O43679 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LDB2O43679 AC148477.8-201ENST00000624298 468 ntBASIC17.09■□□□□ 0.33
LDB2O43679 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms