Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.21■□□□□ 0.03
SGCEO43556 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SGCEO43556 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SGCEO43556 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.21■□□□□ 0.03
SGCEO43556 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SGCEO43556 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SGCEO43556 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.21■□□□□ 0.03
SGCEO43556 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.21■□□□□ 0.03
SGCEO43556 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.21■□□□□ 0.03
SGCEO43556 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.21■□□□□ 0.03
SGCEO43556 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.21■□□□□ 0.03
SGCEO43556 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SGCEO43556 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.21■□□□□ 0.03
SGCEO43556 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SGCEO43556 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SGCEO43556 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.21■□□□□ 0.03
SGCEO43556 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SGCEO43556 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SGCEO43556 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SGCEO43556 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.21■□□□□ 0.02
SGCEO43556 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.21■□□□□ 0.02
SGCEO43556 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SGCEO43556 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SGCEO43556 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SGCEO43556 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.2■□□□□ 0.02
SGCEO43556 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SGCEO43556 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 PMPCAP1-201ENST00000508114 1576 ntBASIC15.2■□□□□ 0.02
SGCEO43556 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SGCEO43556 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SGCEO43556 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.2■□□□□ 0.02
SGCEO43556 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.2■□□□□ 0.02
SGCEO43556 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.2■□□□□ 0.02
SGCEO43556 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SGCEO43556 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
SGCEO43556 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
SGCEO43556 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC15.2■□□□□ 0.02
SGCEO43556 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC15.2■□□□□ 0.02
SGCEO43556 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.2■□□□□ 0.02
SGCEO43556 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.2■□□□□ 0.02
SGCEO43556 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.2■□□□□ 0.02
SGCEO43556 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.2■□□□□ 0.02
SGCEO43556 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 AC092850.2-201ENST00000623821 2697 ntBASIC15.2■□□□□ 0.02
SGCEO43556 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
SGCEO43556 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.2■□□□□ 0.02
SGCEO43556 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SGCEO43556 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.2■□□□□ 0.02
SGCEO43556 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
SGCEO43556 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 AC093525.9-201ENST00000624961 1746 ntBASIC15.2■□□□□ 0.02
SGCEO43556 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SGCEO43556 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SGCEO43556 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SGCEO43556 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SGCEO43556 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.19■□□□□ 0.02
SGCEO43556 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.19■□□□□ 0.02
SGCEO43556 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.19■□□□□ 0.02
SGCEO43556 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SGCEO43556 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
SGCEO43556 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
SGCEO43556 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
SGCEO43556 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.19■□□□□ 0.02
SGCEO43556 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.19■□□□□ 0.02
SGCEO43556 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SGCEO43556 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.19■□□□□ 0.02
SGCEO43556 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SGCEO43556 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SGCEO43556 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.19■□□□□ 0.02
SGCEO43556 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SGCEO43556 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SGCEO43556 ABCD1P5-201ENST00000445663 754 ntBASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms