Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.21■□□□□ 0.34
TRIM49D1C9J1S8 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 AC009336.1-201ENST00000608941 1553 ntBASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 GPR89P-201ENST00000407924 1495 ntBASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 AL353593.2-201ENST00000602529 1483 ntBASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 STK19B-204ENST00000512515 211 ntBASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 CYP2T1P-202ENST00000641596 2535 ntBASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM49D1C9J1S8 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 TSPY22P-201ENST00000427496 604 ntBASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRIM49D1C9J1S8 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM49D1C9J1S8 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM49D1C9J1S8 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM49D1C9J1S8 HLA-A-202ENST00000376806 1854 ntBASIC17.18■□□□□ 0.34
TRIM49D1C9J1S8 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TRIM49D1C9J1S8 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM49D1C9J1S8 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM49D1C9J1S8 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM49D1C9J1S8 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms