Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.29■□□□□ 0.52
SMIM28A0A1B0GU29 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMIM28A0A1B0GU29 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMIM28A0A1B0GU29 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMIM28A0A1B0GU29 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMIM28A0A1B0GU29 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SMIM28A0A1B0GU29 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SMIM28A0A1B0GU29 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SMIM28A0A1B0GU29 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.29■□□□□ 0.52
SMIM28A0A1B0GU29 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 AL353732.1-201ENST00000569618 1459 ntBASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 HMGA1P7-201ENST00000406908 502 ntBASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 AL596442.2-201ENST00000610240 980 ntBASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SMIM28A0A1B0GU29 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 AC140658.5-201ENST00000438532 169 ntBASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.27■□□□□ 0.52
SMIM28A0A1B0GU29 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SMIM28A0A1B0GU29 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
SMIM28A0A1B0GU29 AC092053.1-201ENST00000605787 1936 ntBASIC18.27■□□□□ 0.51
SMIM28A0A1B0GU29 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SMIM28A0A1B0GU29 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SMIM28A0A1B0GU29 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SMIM28A0A1B0GU29 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SMIM28A0A1B0GU29 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.27■□□□□ 0.51
SMIM28A0A1B0GU29 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SMIM28A0A1B0GU29 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 SLC22A20-204ENST00000530038 1673 ntBASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 AC254562.1-201ENST00000417586 456 ntBASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 AC112191.1-201ENST00000523689 701 ntBASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 AC012569.1-201ENST00000591191 1524 ntBASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.26■□□□□ 0.51
SMIM28A0A1B0GU29 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms