Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 KRT18P3-201ENST00000451602 1288 ntBASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 AC010654.1-201ENST00000615722 808 ntBASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 AL023806.1-201ENST00000603994 1649 ntBASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX9Q9Y5X1 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SNX9Q9Y5X1 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.33■□□□□ 0.53
SNX9Q9Y5X1 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SNX9Q9Y5X1 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.33■□□□□ 0.53
SNX9Q9Y5X1 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SNX9Q9Y5X1 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SNX9Q9Y5X1 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.33■□□□□ 0.53
SNX9Q9Y5X1 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SNX9Q9Y5X1 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SNX9Q9Y5X1 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 OR7E47P-204ENST00000575924 449 ntBASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SNX9Q9Y5X1 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 AC087163.2-201ENST00000457299 853 ntBASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 RNA5SP416-201ENST00000516838 111 ntBASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX9Q9Y5X1 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 PMS2P7-201ENST00000506558 1336 ntBASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 KRT18P2-201ENST00000447938 1258 ntBASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 HCG4B-203ENST00000450128 991 ntBASIC18.31■□□□□ 0.52
SNX9Q9Y5X1 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms