Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
BRF2Q9HAW0 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
BRF2Q9HAW0 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.41■□□□□ 0.22
BRF2Q9HAW0 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BRF2Q9HAW0 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BRF2Q9HAW0 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 KRT18P31-201ENST00000506277 1292 ntBASIC16.4■□□□□ 0.22
BRF2Q9HAW0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 AL353135.1-201ENST00000606729 504 ntBASIC16.4■□□□□ 0.22
BRF2Q9HAW0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 AC078925.2-201ENST00000624013 1973 ntBASIC16.4■□□□□ 0.22
BRF2Q9HAW0 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRF2Q9HAW0 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
BRF2Q9HAW0 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
BRF2Q9HAW0 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 AC099398.1-201ENST00000567919 2776 ntBASIC16.39■□□□□ 0.21
BRF2Q9HAW0 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 AL356309.3-201ENST00000624132 1934 ntBASIC16.39■□□□□ 0.21
BRF2Q9HAW0 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 AL590787.1-201ENST00000568856 1315 ntBASIC16.39■□□□□ 0.21
BRF2Q9HAW0 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
BRF2Q9HAW0 AL021920.2-201ENST00000624828 1351 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 FLJ38576-201ENST00000623820 2459 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 TSPY19P-201ENST00000418461 509 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 TSPY18P-201ENST00000441642 509 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms