Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 PAWRP1-201ENST00000451083 565 ntBASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 PDPK2P-202ENST00000562415 1191 ntBASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 AC018845.2-201ENST00000568326 409 ntBASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 AC010507.1-201ENST00000633895 436 ntBASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 AC006116.8-202ENST00000587620 1550 ntBASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRAIPQ9BWF2 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 PI4KAP1-204ENST00000612579 1703 ntBASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 AL513190.1-201ENST00000621254 727 ntBASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAIPQ9BWF2 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 AL645608.8-201ENST00000606034 2086 ntBASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 AC211486.1-202ENST00000416371 468 ntBASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 AC211476.1-201ENST00000503899 468 ntBASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 LINC00304-203ENST00000565008 1864 ntBASIC18.77■□□□□ 0.6
TRAIPQ9BWF2 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
TRAIPQ9BWF2 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TRAIPQ9BWF2 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.77■□□□□ 0.59
TRAIPQ9BWF2 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
TRAIPQ9BWF2 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRAIPQ9BWF2 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRAIPQ9BWF2 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRAIPQ9BWF2 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.77■□□□□ 0.59
TRAIPQ9BWF2 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRAIPQ9BWF2 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAIPQ9BWF2 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms