Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CPNE4Q96A23 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CPNE4Q96A23 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
CPNE4Q96A23 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CPNE4Q96A23 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CPNE4Q96A23 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.43■□□□□ 0.06
CPNE4Q96A23 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CPNE4Q96A23 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CPNE4Q96A23 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CPNE4Q96A23 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CPNE4Q96A23 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CPNE4Q96A23 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.43■□□□□ 0.06
CPNE4Q96A23 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 OR6D1P-203ENST00000641209 4860 ntBASIC15.42■□□□□ 0.06
CPNE4Q96A23 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 AC006504.4-201ENST00000592118 1568 ntBASIC15.42■□□□□ 0.06
CPNE4Q96A23 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 AP002414.3-201ENST00000589352 1468 ntBASIC15.42■□□□□ 0.06
CPNE4Q96A23 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 AC098831.1-202ENST00000438821 336 ntBASIC15.42■□□□□ 0.06
CPNE4Q96A23 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 AC120114.3-201ENST00000611923 658 ntBASIC15.42■□□□□ 0.06
CPNE4Q96A23 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 FER1L4-210ENST00000615531 5998 ntBASIC15.42■□□□□ 0.06
CPNE4Q96A23 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 IL9RP2-201ENST00000423948 1312 ntBASIC15.42■□□□□ 0.06
CPNE4Q96A23 AL590787.1-201ENST00000568856 1315 ntBASIC15.42■□□□□ 0.06
CPNE4Q96A23 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CPNE4Q96A23 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CPNE4Q96A23 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 FST-202ENST00000396947 2538 ntTSL 5 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 AC093525.9-201ENST00000624961 1746 ntBASIC15.41■□□□□ 0.06
CPNE4Q96A23 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 AP002414.1-201ENST00000391405 1147 ntBASIC15.41■□□□□ 0.06
CPNE4Q96A23 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.41■□□□□ 0.06
CPNE4Q96A23 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 RPS15P9-201ENST00000494093 319 ntBASIC15.41■□□□□ 0.06
CPNE4Q96A23 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.41■□□□□ 0.06
CPNE4Q96A23 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 AC124067.4-201ENST00000519691 2379 ntBASIC15.41■□□□□ 0.06
CPNE4Q96A23 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 AC116353.5-201ENST00000638148 1699 ntBASIC15.41■□□□□ 0.06
CPNE4Q96A23 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CPNE4Q96A23 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.41■□□□□ 0.06
CPNE4Q96A23 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CPNE4Q96A23 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CPNE4Q96A23 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CPNE4Q96A23 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CPNE4Q96A23 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CPNE4Q96A23 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms