Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HMGB4Q8WW32 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGB4Q8WW32 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 FZD10-202ENST00000539839 3282 ntBASIC17.15■□□□□ 0.34
HMGB4Q8WW32 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 RN7SL589P-201ENST00000481268 310 ntBASIC17.15■□□□□ 0.34
HMGB4Q8WW32 AC079140.1-201ENST00000508039 487 ntBASIC17.15■□□□□ 0.34
HMGB4Q8WW32 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGB4Q8WW32 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
HMGB4Q8WW32 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.14■□□□□ 0.34
HMGB4Q8WW32 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HMGB4Q8WW32 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
HMGB4Q8WW32 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 ABALON-201ENST00000629058 1903 ntBASIC17.14■□□□□ 0.33
HMGB4Q8WW32 TFAMP1-201ENST00000412727 736 ntBASIC17.14■□□□□ 0.33
HMGB4Q8WW32 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 KRT18P32-201ENST00000424695 1287 ntBASIC17.14■□□□□ 0.33
HMGB4Q8WW32 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 LYSMD4-203ENST00000378904 2122 ntBASIC17.14■□□□□ 0.33
HMGB4Q8WW32 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGB4Q8WW32 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.13■□□□□ 0.33
HMGB4Q8WW32 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 OR6D1P-202ENST00000641007 5290 ntBASIC17.13■□□□□ 0.33
HMGB4Q8WW32 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 AC067863.1-201ENST00000494933 530 ntBASIC17.13■□□□□ 0.33
HMGB4Q8WW32 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGB4Q8WW32 DUX4L27-201ENST00000554796 1261 ntBASIC17.13■□□□□ 0.33
HMGB4Q8WW32 AL135744.1-201ENST00000565098 629 ntBASIC17.13■□□□□ 0.33
HMGB4Q8WW32 MIR4515-201ENST00000584082 81 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms