Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 MARS-233ENST00000628866 2583 ntTSL 5 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 AP000593.1-201ENST00000393668 712 ntBASIC10.68□□□□□ -0.7
LINC00643Q86TS7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 AC010141.2-201ENST00000452426 721 ntBASIC10.68□□□□□ -0.7
LINC00643Q86TS7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 AC136469.2-201ENST00000623944 1028 ntBASIC10.68□□□□□ -0.7
LINC00643Q86TS7 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 GAS2L1P2-201ENST00000436355 1356 ntBASIC10.67□□□□□ -0.7
LINC00643Q86TS7 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 OS9-207ENST00000439210 1946 ntTSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 BEX3-202ENST00000372634 753 ntTSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 SLC7A5P2-201ENST00000553010 536 ntBASIC10.67□□□□□ -0.7
LINC00643Q86TS7 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 AC010997.5-201ENST00000609182 354 ntBASIC10.67□□□□□ -0.7
LINC00643Q86TS7 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
LINC00643Q86TS7 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 GOLGA6L3-201ENST00000507199 1679 ntBASIC10.66□□□□□ -0.7
LINC00643Q86TS7 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
LINC00643Q86TS7 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC10.66□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms