Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 BX005266.1-201ENST00000473402 457 ntBASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 KRT18P31-201ENST00000506277 1292 ntBASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
ZNF549Q6P9A3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 TSPY19P-201ENST00000418461 509 ntBASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 LINC00982-205ENST00000420957 435 ntBASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 TSPY18P-201ENST00000441642 509 ntBASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ZNF549Q6P9A3 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ZNF549Q6P9A3 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
ZNF549Q6P9A3 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
ZNF549Q6P9A3 AC078925.2-201ENST00000624013 1973 ntBASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms