Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 AC132938.6-201ENST00000623828 1655 ntBASIC16.5■□□□□ 0.23
COL28A1Q2UY09 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 AC022145.2-201ENST00000598203 171 ntBASIC16.5■□□□□ 0.23
COL28A1Q2UY09 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.5■□□□□ 0.23
COL28A1Q2UY09 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AP002414.1-201ENST00000391405 1147 ntBASIC16.49■□□□□ 0.23
COL28A1Q2UY09 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 RPS15P9-201ENST00000494093 319 ntBASIC16.49■□□□□ 0.23
COL28A1Q2UY09 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AC008667.4-201ENST00000607370 168 ntBASIC16.49■□□□□ 0.23
COL28A1Q2UY09 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AC025580.3-201ENST00000617932 1424 ntBASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AC092902.6-201ENST00000641783 218 ntBASIC16.49■□□□□ 0.23
COL28A1Q2UY09 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AC124067.4-201ENST00000519691 2379 ntBASIC16.49■□□□□ 0.23
COL28A1Q2UY09 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.49■□□□□ 0.23
COL28A1Q2UY09 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms