Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
ABCA4P78363 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
ABCA4P78363 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
ABCA4P78363 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
ABCA4P78363 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC14.73□□□□□ -0.05
ABCA4P78363 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
ABCA4P78363 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC14.72□□□□□ -0.05
ABCA4P78363 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
ABCA4P78363 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.72□□□□□ -0.05
ABCA4P78363 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.72□□□□□ -0.05
ABCA4P78363 GAPDHP21-201ENST00000450301 1010 ntBASIC14.72□□□□□ -0.05
ABCA4P78363 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.72□□□□□ -0.05
ABCA4P78363 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.72□□□□□ -0.05
ABCA4P78363 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
ABCA4P78363 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.72□□□□□ -0.05
ABCA4P78363 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.72□□□□□ -0.05
ABCA4P78363 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
ABCA4P78363 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
ABCA4P78363 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC14.72□□□□□ -0.05
ABCA4P78363 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
ABCA4P78363 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
ABCA4P78363 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCA4P78363 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.72□□□□□ -0.05
ABCA4P78363 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.72□□□□□ -0.05
ABCA4P78363 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.72□□□□□ -0.05
ABCA4P78363 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
ABCA4P78363 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
ABCA4P78363 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
ABCA4P78363 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
ABCA4P78363 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC14.71□□□□□ -0.05
ABCA4P78363 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC14.71□□□□□ -0.05
ABCA4P78363 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
ABCA4P78363 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCA4P78363 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
ABCA4P78363 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
ABCA4P78363 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.71□□□□□ -0.05
ABCA4P78363 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC14.71□□□□□ -0.05
ABCA4P78363 HLA-V-201ENST00000429037 534 ntBASIC14.71□□□□□ -0.05
ABCA4P78363 KRT8P48-201ENST00000515599 1220 ntBASIC14.71□□□□□ -0.05
ABCA4P78363 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
ABCA4P78363 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
ABCA4P78363 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCA4P78363 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
ABCA4P78363 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.71□□□□□ -0.05
ABCA4P78363 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCA4P78363 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
ABCA4P78363 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
ABCA4P78363 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.06
ABCA4P78363 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
ABCA4P78363 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
ABCA4P78363 AC138028.4-201ENST00000564984 1845 ntBASIC14.71□□□□□ -0.06
ABCA4P78363 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
ABCA4P78363 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.71□□□□□ -0.06
ABCA4P78363 AC107890.1-201ENST00000422478 521 ntBASIC14.71□□□□□ -0.06
ABCA4P78363 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.71□□□□□ -0.06
ABCA4P78363 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.71□□□□□ -0.06
ABCA4P78363 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.71□□□□□ -0.06
ABCA4P78363 MIR6752-201ENST00000618442 71 ntBASIC14.71□□□□□ -0.06
ABCA4P78363 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
ABCA4P78363 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.71□□□□□ -0.06
ABCA4P78363 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC14.71□□□□□ -0.06
ABCA4P78363 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
ABCA4P78363 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
ABCA4P78363 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
ABCA4P78363 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC14.7□□□□□ -0.06
ABCA4P78363 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.7□□□□□ -0.06
ABCA4P78363 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.7□□□□□ -0.06
ABCA4P78363 AC012317.2-201ENST00000623305 2251 ntBASIC14.7□□□□□ -0.06
ABCA4P78363 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.7□□□□□ -0.06
ABCA4P78363 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
ABCA4P78363 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
ABCA4P78363 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
ABCA4P78363 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
ABCA4P78363 MIR661-201ENST00000384842 89 ntBASIC14.7□□□□□ -0.06
ABCA4P78363 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.7□□□□□ -0.06
ABCA4P78363 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.7□□□□□ -0.06
ABCA4P78363 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.7□□□□□ -0.06
ABCA4P78363 CRB3P1-201ENST00000449338 276 ntBASIC14.7□□□□□ -0.06
ABCA4P78363 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.7□□□□□ -0.06
ABCA4P78363 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms