Protein–RNA interactions for Protein: P49662

CASP4, Caspase-4, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4P49662 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.7■□□□□ 0.58
CASP4P49662 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.7■□□□□ 0.58
CASP4P49662 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.7■□□□□ 0.58
CASP4P49662 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.7■□□□□ 0.58
CASP4P49662 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.7■□□□□ 0.58
CASP4P49662 AP002469.2-201ENST00000531724 424 ntBASIC18.7■□□□□ 0.58
CASP4P49662 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
CASP4P49662 DUX4L17-201ENST00000557360 1267 ntBASIC18.7■□□□□ 0.58
CASP4P49662 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.7■□□□□ 0.58
CASP4P49662 AC139887.3-201ENST00000568585 713 ntBASIC18.7■□□□□ 0.58
CASP4P49662 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.7■□□□□ 0.58
CASP4P49662 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.7■□□□□ 0.58
CASP4P49662 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.7■□□□□ 0.58
CASP4P49662 AC004706.3-202ENST00000621574 984 ntBASIC18.7■□□□□ 0.58
CASP4P49662 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.7■□□□□ 0.58
CASP4P49662 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CASP4P49662 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CASP4P49662 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.7■□□□□ 0.58
CASP4P49662 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
CASP4P49662 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CASP4P49662 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CASP4P49662 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 FLJ38576-201ENST00000623820 2459 ntBASIC18.69■□□□□ 0.58
CASP4P49662 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.69■□□□□ 0.58
CASP4P49662 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.69■□□□□ 0.58
CASP4P49662 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CASP4P49662 MRPL3P1-201ENST00000400109 1033 ntBASIC18.69■□□□□ 0.58
CASP4P49662 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.69■□□□□ 0.58
CASP4P49662 AC018712.1-201ENST00000455767 687 ntBASIC18.69■□□□□ 0.58
CASP4P49662 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.69■□□□□ 0.58
CASP4P49662 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CASP4P49662 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.69■□□□□ 0.58
CASP4P49662 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.69■□□□□ 0.58
CASP4P49662 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.69■□□□□ 0.58
CASP4P49662 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CASP4P49662 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CASP4P49662 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.69■□□□□ 0.58
CASP4P49662 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CASP4P49662 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CASP4P49662 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CASP4P49662 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.69■□□□□ 0.58
CASP4P49662 AC006504.4-201ENST00000592118 1568 ntBASIC18.68■□□□□ 0.58
CASP4P49662 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CASP4P49662 PCDHB17P-201ENST00000539533 2393 ntBASIC18.68■□□□□ 0.58
CASP4P49662 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.68■□□□□ 0.58
CASP4P49662 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.68■□□□□ 0.58
CASP4P49662 AP002414.1-201ENST00000391405 1147 ntBASIC18.68■□□□□ 0.58
CASP4P49662 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.68■□□□□ 0.58
CASP4P49662 FAAHP1-202ENST00000446499 1238 ntBASIC18.68■□□□□ 0.58
CASP4P49662 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.68■□□□□ 0.58
CASP4P49662 AC009078.2-202ENST00000463353 338 ntBASIC18.68■□□□□ 0.58
CASP4P49662 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CASP4P49662 AC073648.2-201ENST00000510116 352 ntBASIC18.68■□□□□ 0.58
CASP4P49662 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.68■□□□□ 0.58
CASP4P49662 AC107918.4-202ENST00000641623 219 ntBASIC18.68■□□□□ 0.58
CASP4P49662 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.68■□□□□ 0.58
CASP4P49662 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms