Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.31■□□□□ 0.2
RORAP35398 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.31■□□□□ 0.2
RORAP35398 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
RORAP35398 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.31■□□□□ 0.2
RORAP35398 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
RORAP35398 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RORAP35398 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.31■□□□□ 0.2
RORAP35398 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.31■□□□□ 0.2
RORAP35398 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.31■□□□□ 0.2
RORAP35398 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.31■□□□□ 0.2
RORAP35398 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RORAP35398 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
RORAP35398 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RORAP35398 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.3■□□□□ 0.2
RORAP35398 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RORAP35398 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.3■□□□□ 0.2
RORAP35398 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
RORAP35398 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.3■□□□□ 0.2
RORAP35398 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.3■□□□□ 0.2
RORAP35398 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
RORAP35398 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.3■□□□□ 0.2
RORAP35398 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.3■□□□□ 0.2
RORAP35398 AC096734.2-201ENST00000562054 433 ntBASIC16.3■□□□□ 0.2
RORAP35398 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.3■□□□□ 0.2
RORAP35398 AL513190.1-201ENST00000621254 727 ntBASIC16.3■□□□□ 0.2
RORAP35398 AC010507.1-201ENST00000633895 436 ntBASIC16.3■□□□□ 0.2
RORAP35398 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
RORAP35398 PI4KAP1-204ENST00000612579 1703 ntBASIC16.3■□□□□ 0.2
RORAP35398 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.3■□□□□ 0.2
RORAP35398 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.3■□□□□ 0.2
RORAP35398 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
RORAP35398 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RORAP35398 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
RORAP35398 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RORAP35398 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.29■□□□□ 0.2
RORAP35398 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
RORAP35398 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.29■□□□□ 0.2
RORAP35398 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RORAP35398 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
RORAP35398 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.29■□□□□ 0.2
RORAP35398 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.29■□□□□ 0.2
RORAP35398 AC004967.1-201ENST00000453589 447 ntBASIC16.29■□□□□ 0.2
RORAP35398 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.29■□□□□ 0.2
RORAP35398 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.29■□□□□ 0.2
RORAP35398 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.29■□□□□ 0.2
RORAP35398 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.29■□□□□ 0.2
RORAP35398 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.29■□□□□ 0.2
RORAP35398 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.29■□□□□ 0.2
RORAP35398 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.29■□□□□ 0.2
RORAP35398 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
RORAP35398 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.29■□□□□ 0.2
RORAP35398 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
RORAP35398 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RORAP35398 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 LYSMD4-203ENST00000378904 2122 ntBASIC16.28■□□□□ 0.2
RORAP35398 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
RORAP35398 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RORAP35398 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms