Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.62■□□□□ 0.41
COL6A3P12111 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A3P12111 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A3P12111 AC123567.1-201ENST00000548294 1261 ntBASIC17.62■□□□□ 0.41
COL6A3P12111 AC044860.1-202ENST00000559481 777 ntBASIC17.62■□□□□ 0.41
COL6A3P12111 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A3P12111 AC148477.9-201ENST00000623974 539 ntBASIC17.62■□□□□ 0.41
COL6A3P12111 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.62■□□□□ 0.41
COL6A3P12111 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A3P12111 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A3P12111 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A3P12111 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
COL6A3P12111 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
COL6A3P12111 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
COL6A3P12111 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A3P12111 SLC25A47P1-201ENST00000531577 414 ntBASIC17.61■□□□□ 0.41
COL6A3P12111 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A3P12111 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
COL6A3P12111 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
COL6A3P12111 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC17.61■□□□□ 0.41
COL6A3P12111 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL6A3P12111 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
COL6A3P12111 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A3P12111 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
COL6A3P12111 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL6A3P12111 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A3P12111 AC026954.1-201ENST00000429771 1293 ntBASIC17.61■□□□□ 0.41
COL6A3P12111 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A3P12111 AC104784.1-201ENST00000473096 294 ntBASIC17.61■□□□□ 0.41
COL6A3P12111 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.61■□□□□ 0.41
COL6A3P12111 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A3P12111 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A3P12111 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A3P12111 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
COL6A3P12111 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
COL6A3P12111 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A3P12111 KRT43P-201ENST00000434019 910 ntBASIC17.6■□□□□ 0.41
COL6A3P12111 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A3P12111 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 AC233724.13-201ENST00000598383 410 ntBASIC17.6■□□□□ 0.41
COL6A3P12111 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL6A3P12111 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL6A3P12111 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
COL6A3P12111 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A3P12111 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.6■□□□□ 0.41
COL6A3P12111 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.6■□□□□ 0.41
COL6A3P12111 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A3P12111 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.6■□□□□ 0.41
COL6A3P12111 MIR3909-201ENST00000579518 119 ntBASIC17.6■□□□□ 0.41
COL6A3P12111 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A3P12111 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
COL6A3P12111 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
COL6A3P12111 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
COL6A3P12111 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A3P12111 AL035456.1-201ENST00000456064 1369 ntBASIC17.59■□□□□ 0.41
COL6A3P12111 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
COL6A3P12111 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.59■□□□□ 0.41
COL6A3P12111 SDHAP3-202ENST00000515467 728 ntBASIC17.59■□□□□ 0.41
COL6A3P12111 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.59■□□□□ 0.41
COL6A3P12111 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
COL6A3P12111 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A3P12111 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.59■□□□□ 0.41
COL6A3P12111 RN7SL555P-201ENST00000584742 339 ntBASIC17.59■□□□□ 0.41
COL6A3P12111 AC091271.1-201ENST00000611877 1162 ntBASIC17.59■□□□□ 0.41
COL6A3P12111 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
COL6A3P12111 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A3P12111 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
COL6A3P12111 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A3P12111 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.59■□□□□ 0.41
COL6A3P12111 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
COL6A3P12111 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.59■□□□□ 0.41
COL6A3P12111 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A3P12111 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A3P12111 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
COL6A3P12111 UPF3AP2-201ENST00000457924 1132 ntBASIC17.59■□□□□ 0.41
COL6A3P12111 AKR7A2P1-201ENST00000460134 915 ntBASIC17.59■□□□□ 0.41
COL6A3P12111 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC17.59■□□□□ 0.41
COL6A3P12111 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.59■□□□□ 0.41
COL6A3P12111 MIR3619-201ENST00000579667 83 ntBASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms