Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CSB-PGBD3P0DP91 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CSB-PGBD3P0DP91 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CSB-PGBD3P0DP91 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CSB-PGBD3P0DP91 AC098818.2-201ENST00000564925 2320 ntBASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 GOLGA6L11P-201ENST00000417252 1298 ntBASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 HLA-J-202ENST00000469281 1241 ntBASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 AC084121.4-201ENST00000641598 221 ntBASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 AF228730.8-201ENST00000642140 221 ntBASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
CSB-PGBD3P0DP91 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 GAPDHP21-201ENST00000450301 1010 ntBASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
CSB-PGBD3P0DP91 AL353732.1-201ENST00000569618 1459 ntBASIC22.58■■□□□ 1.2
CSB-PGBD3P0DP91 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC22.58■■□□□ 1.2
CSB-PGBD3P0DP91 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.2
CSB-PGBD3P0DP91 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
CSB-PGBD3P0DP91 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CSB-PGBD3P0DP91 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.2
CSB-PGBD3P0DP91 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
CSB-PGBD3P0DP91 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 AL138781.2-201ENST00000617896 1843 ntBASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 AP005018.1-201ENST00000525475 301 ntBASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 AC027307.2-201ENST00000591252 911 ntBASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CSB-PGBD3P0DP91 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 AP000842.3-202ENST00000569238 1080 ntBASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 AC008267.7-201ENST00000624570 1194 ntBASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC22.56■■□□□ 1.2
CSB-PGBD3P0DP91 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms