Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.8■□□□□ 0.28
SIX3O95343 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.8■□□□□ 0.28
SIX3O95343 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SIX3O95343 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SIX3O95343 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX3O95343 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX3O95343 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.8■□□□□ 0.28
SIX3O95343 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SIX3O95343 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.8■□□□□ 0.28
SIX3O95343 GPR89P-201ENST00000407924 1495 ntBASIC16.8■□□□□ 0.28
SIX3O95343 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
SIX3O95343 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
SIX3O95343 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX3O95343 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.79■□□□□ 0.28
SIX3O95343 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.79■□□□□ 0.28
SIX3O95343 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.79■□□□□ 0.28
SIX3O95343 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
SIX3O95343 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.79■□□□□ 0.28
SIX3O95343 AC114341.1-201ENST00000618070 349 ntBASIC16.79■□□□□ 0.28
SIX3O95343 AL358472.4-201ENST00000633140 710 ntBASIC16.79■□□□□ 0.28
SIX3O95343 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 AP000550.4-202ENST00000639755 178 ntBASIC16.79■□□□□ 0.28
SIX3O95343 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX3O95343 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
SIX3O95343 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SIX3O95343 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SIX3O95343 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SIX3O95343 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX3O95343 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.78■□□□□ 0.28
SIX3O95343 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 PCDHB17P-201ENST00000539533 2393 ntBASIC16.78■□□□□ 0.28
SIX3O95343 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SIX3O95343 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
SIX3O95343 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.78■□□□□ 0.28
SIX3O95343 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.78■□□□□ 0.28
SIX3O95343 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SIX3O95343 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
SIX3O95343 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.78■□□□□ 0.28
SIX3O95343 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.78■□□□□ 0.28
SIX3O95343 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.78■□□□□ 0.28
SIX3O95343 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.78■□□□□ 0.28
SIX3O95343 NPAP1P7-201ENST00000613027 823 ntBASIC16.78■□□□□ 0.28
SIX3O95343 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.78■□□□□ 0.28
SIX3O95343 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SIX3O95343 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SIX3O95343 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX3O95343 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
SIX3O95343 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
SIX3O95343 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX3O95343 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX3O95343 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.77■□□□□ 0.28
SIX3O95343 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX3O95343 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SIX3O95343 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX3O95343 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.77■□□□□ 0.28
SIX3O95343 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms