Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 FAM220CP-201ENST00000395253 831 ntBASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 KRT18P57-201ENST00000443599 1254 ntBASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 AL592071.1-201ENST00000611956 408 ntBASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 AC006011.2-201ENST00000621313 1158 ntBASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 AC124864.1-201ENST00000623408 392 ntBASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM49D1C9J1S8 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AL391005.1-201ENST00000623953 2435 ntBASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 PCDHB17P-201ENST00000539533 2393 ntBASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AK4P3-201ENST00000418260 669 ntBASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AL845331.1-201ENST00000424978 1190 ntBASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AC092647.4-201ENST00000457211 535 ntBASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AL353801.3-201ENST00000609898 542 ntBASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AC083849.1-201ENST00000615227 514 ntBASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AC097493.4-201ENST00000641197 219 ntBASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM49D1C9J1S8 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.21■□□□□ 0.34
TRIM49D1C9J1S8 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRIM49D1C9J1S8 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.21■□□□□ 0.34
TRIM49D1C9J1S8 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms