Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PCDHGA3Q9Y5H0 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 AC007967.2-201ENST00000432613 625 ntBASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 AP001160.2-201ENST00000596071 487 ntBASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 AC108860.2-201ENST00000562760 2183 ntBASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 AC068418.2-201ENST00000577309 3703 ntBASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDHGA3Q9Y5H0 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 AL353593.2-201ENST00000602529 1483 ntBASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 AL020989.1-201ENST00000422979 469 ntBASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 AC004967.1-201ENST00000453589 447 ntBASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 MTDHP5-201ENST00000598980 586 ntBASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.75■□□□□ 0.27
PCDHGA3Q9Y5H0 PHGDH-209ENST00000641074 1780 ntBASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 AC093677.2-201ENST00000600169 1863 ntBASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms