Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
AP4S1Q9Y587 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 AC112698.1-201ENST00000510299 916 ntBASIC16.28■□□□□ 0.2
AP4S1Q9Y587 RPPH1-201ENST00000516869 333 ntBASIC16.28■□□□□ 0.2
AP4S1Q9Y587 AC006058.3-201ENST00000606217 1069 ntBASIC16.28■□□□□ 0.2
AP4S1Q9Y587 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 HLA-A-202ENST00000376806 1854 ntBASIC16.28■□□□□ 0.2
AP4S1Q9Y587 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.28■□□□□ 0.2
AP4S1Q9Y587 AL135905.2-201ENST00000584934 1404 ntBASIC16.28■□□□□ 0.2
AP4S1Q9Y587 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.27■□□□□ 0.2
AP4S1Q9Y587 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 AL355802.2-201ENST00000402069 882 ntBASIC16.27■□□□□ 0.2
AP4S1Q9Y587 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 CCR12P-201ENST00000446203 998 ntBASIC16.27■□□□□ 0.2
AP4S1Q9Y587 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 ADM-205ENST00000528544 586 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
AP4S1Q9Y587 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.27■□□□□ 0.19
AP4S1Q9Y587 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4S1Q9Y587 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
AP4S1Q9Y587 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
AP4S1Q9Y587 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4S1Q9Y587 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
AP4S1Q9Y587 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
AP4S1Q9Y587 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms