Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 AC008267.7-201ENST00000624570 1194 ntBASIC16.79■□□□□ 0.28
VPS13AQ96RL7 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS13AQ96RL7 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 AC018529.1-201ENST00000613063 361 ntBASIC16.78■□□□□ 0.28
VPS13AQ96RL7 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 GNAQP1-201ENST00000444815 1067 ntBASIC16.78■□□□□ 0.28
VPS13AQ96RL7 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 AC135586.1-201ENST00000539323 574 ntBASIC16.78■□□□□ 0.28
VPS13AQ96RL7 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 RN7SL190P-201ENST00000582519 257 ntBASIC16.78■□□□□ 0.28
VPS13AQ96RL7 MIR6869-201ENST00000619434 62 ntBASIC16.78■□□□□ 0.28
VPS13AQ96RL7 AC073592.8-201ENST00000624126 511 ntBASIC16.78■□□□□ 0.28
VPS13AQ96RL7 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VPS13AQ96RL7 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 WASH4P-201ENST00000564273 1246 ntBASIC16.77■□□□□ 0.28
VPS13AQ96RL7 MIR6775-201ENST00000617557 69 ntBASIC16.77■□□□□ 0.28
VPS13AQ96RL7 RETN-203ENST00000629642 400 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 SNX1-214ENST00000625244 324 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS13AQ96RL7 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 AC012569.1-201ENST00000591191 1524 ntBASIC16.77■□□□□ 0.27
VPS13AQ96RL7 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.77■□□□□ 0.27
VPS13AQ96RL7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 AC087499.5-201ENST00000452760 1342 ntBASIC16.76■□□□□ 0.27
VPS13AQ96RL7 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 RHOQP1-201ENST00000555758 579 ntBASIC16.76■□□□□ 0.27
VPS13AQ96RL7 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 SLC7A15P-201ENST00000424028 1363 ntBASIC16.76■□□□□ 0.27
VPS13AQ96RL7 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS13AQ96RL7 AL031598.1-201ENST00000561511 1773 ntBASIC16.76■□□□□ 0.27
VPS13AQ96RL7 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms