Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
ERCC4Q92889 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.53■□□□□ 0.72
ERCC4Q92889 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 RCN1P1-201ENST00000400413 996 ntBASIC19.53■□□□□ 0.72
ERCC4Q92889 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.53■□□□□ 0.72
ERCC4Q92889 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 FUK-207ENST00000571514 3054 ntTSL 2 BASIC19.53■□□□□ 0.72
ERCC4Q92889 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
ERCC4Q92889 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
ERCC4Q92889 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ERCC4Q92889 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.52■□□□□ 0.72
ERCC4Q92889 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
ERCC4Q92889 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ERCC4Q92889 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ERCC4Q92889 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.52■□□□□ 0.72
ERCC4Q92889 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
ERCC4Q92889 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
ERCC4Q92889 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.52■□□□□ 0.72
ERCC4Q92889 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.52■□□□□ 0.72
ERCC4Q92889 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.52■□□□□ 0.72
ERCC4Q92889 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.52■□□□□ 0.72
ERCC4Q92889 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.52■□□□□ 0.72
ERCC4Q92889 AL138831.2-201ENST00000606564 490 ntBASIC19.52■□□□□ 0.72
ERCC4Q92889 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.52■□□□□ 0.72
ERCC4Q92889 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.52■□□□□ 0.72
ERCC4Q92889 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
ERCC4Q92889 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.52■□□□□ 0.72
ERCC4Q92889 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ERCC4Q92889 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.52■□□□□ 0.72
ERCC4Q92889 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
ERCC4Q92889 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.52■□□□□ 0.72
ERCC4Q92889 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.52■□□□□ 0.72
ERCC4Q92889 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
ERCC4Q92889 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
ERCC4Q92889 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
ERCC4Q92889 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
ERCC4Q92889 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
ERCC4Q92889 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
ERCC4Q92889 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC19.52■□□□□ 0.71
ERCC4Q92889 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.51■□□□□ 0.71
ERCC4Q92889 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
ERCC4Q92889 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
ERCC4Q92889 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.51■□□□□ 0.71
ERCC4Q92889 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.51■□□□□ 0.71
ERCC4Q92889 DUX4L26-201ENST00000489078 1255 ntBASIC19.51■□□□□ 0.71
ERCC4Q92889 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.51■□□□□ 0.71
ERCC4Q92889 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.51■□□□□ 0.71
ERCC4Q92889 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.51■□□□□ 0.71
ERCC4Q92889 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.51■□□□□ 0.71
ERCC4Q92889 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
ERCC4Q92889 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ERCC4Q92889 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
ERCC4Q92889 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
ERCC4Q92889 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
ERCC4Q92889 PKD1P5-201ENST00000532415 10291 ntBASIC19.5■□□□□ 0.71
ERCC4Q92889 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.5■□□□□ 0.71
ERCC4Q92889 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.5■□□□□ 0.71
ERCC4Q92889 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
ERCC4Q92889 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.5■□□□□ 0.71
ERCC4Q92889 GUSBP12-201ENST00000513727 720 ntBASIC19.5■□□□□ 0.71
ERCC4Q92889 KRT18P21-201ENST00000515767 1272 ntBASIC19.5■□□□□ 0.71
ERCC4Q92889 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ERCC4Q92889 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.5■□□□□ 0.71
ERCC4Q92889 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms