Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.24■□□□□ 0.99
SYNE4Q8N205 AL135744.1-201ENST00000565098 629 ntBASIC21.24■□□□□ 0.99
SYNE4Q8N205 SPDYE9P-201ENST00000570642 692 ntBASIC21.24■□□□□ 0.99
SYNE4Q8N205 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNE4Q8N205 AC015911.4-201ENST00000588022 1070 ntBASIC21.24■□□□□ 0.99
SYNE4Q8N205 SPDYE10P-202ENST00000612005 668 ntBASIC21.24■□□□□ 0.99
SYNE4Q8N205 SPDYE8P-202ENST00000612377 668 ntBASIC21.24■□□□□ 0.99
SYNE4Q8N205 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.24■□□□□ 0.99
SYNE4Q8N205 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SYNE4Q8N205 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.24■□□□□ 0.99
SYNE4Q8N205 AF228730.6-201ENST00000641497 218 ntBASIC21.24■□□□□ 0.99
SYNE4Q8N205 AC084121.3-201ENST00000641716 218 ntBASIC21.24■□□□□ 0.99
SYNE4Q8N205 AC105233.6-201ENST00000642093 218 ntBASIC21.24■□□□□ 0.99
SYNE4Q8N205 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.24■□□□□ 0.99
SYNE4Q8N205 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNE4Q8N205 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SYNE4Q8N205 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNE4Q8N205 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNE4Q8N205 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNE4Q8N205 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 KLK8-202ENST00000320838 456 ntTSL 5 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 GPS2P2-201ENST00000430745 888 ntBASIC21.23■□□□□ 0.99
SYNE4Q8N205 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
SYNE4Q8N205 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNE4Q8N205 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 AC015922.1-201ENST00000421102 1152 ntBASIC21.22■□□□□ 0.99
SYNE4Q8N205 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNE4Q8N205 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.22■□□□□ 0.99
SYNE4Q8N205 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SYNE4Q8N205 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNE4Q8N205 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNE4Q8N205 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC21.21■□□□□ 0.99
SYNE4Q8N205 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.21■□□□□ 0.99
SYNE4Q8N205 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNE4Q8N205 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SYNE4Q8N205 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNE4Q8N205 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC21.21■□□□□ 0.99
SYNE4Q8N205 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNE4Q8N205 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNE4Q8N205 PMS2P4-201ENST00000412466 1052 ntBASIC21.21■□□□□ 0.99
SYNE4Q8N205 SPCS2P4-201ENST00000436160 681 ntBASIC21.21■□□□□ 0.99
SYNE4Q8N205 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC21.21■□□□□ 0.99
SYNE4Q8N205 AC067863.1-201ENST00000494933 530 ntBASIC21.21■□□□□ 0.99
SYNE4Q8N205 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNE4Q8N205 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNE4Q8N205 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SYNE4Q8N205 LINC01225-203ENST00000563550 1244 ntBASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms