Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 LINC00304-203ENST00000565008 1864 ntBASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 KRT18P32-201ENST00000424695 1287 ntBASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 FAM58DP-201ENST00000428076 619 ntBASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 CNN2P2-201ENST00000443536 909 ntBASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 CNN2P3-201ENST00000450201 906 ntBASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 AC069335.1-201ENST00000489972 472 ntBASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 MIR4745-201ENST00000577608 62 ntBASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 AL136317.3-201ENST00000618497 906 ntBASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NPAS3Q8IXF0 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
NPAS3Q8IXF0 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
NPAS3Q8IXF0 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.71■□□□□ 0.42
NPAS3Q8IXF0 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
NPAS3Q8IXF0 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
NPAS3Q8IXF0 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 LYSMD4-203ENST00000378904 2122 ntBASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 DUX4L17-201ENST00000557360 1267 ntBASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 ABALON-201ENST00000629058 1903 ntBASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 AKAP8P1-201ENST00000434743 1349 ntBASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
NPAS3Q8IXF0 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 HMGA1P7-201ENST00000406908 502 ntBASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 AC093214.1-201ENST00000511688 1107 ntBASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 AL512356.2-201ENST00000546955 174 ntBASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.69■□□□□ 0.42
NPAS3Q8IXF0 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms