Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 MIR4508-201ENST00000584178 70 ntBASIC10.7□□□□□ -0.7
LINC00643Q86TS7 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
LINC00643Q86TS7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 HTR7P1-201ENST00000538670 1336 ntBASIC10.69□□□□□ -0.7
LINC00643Q86TS7 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 MFF-208ENST00000409616 1247 ntTSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 SERP1-208ENST00000491660 830 ntTSL 2 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 MFSD11-216ENST00000590393 1141 ntBASIC10.69□□□□□ -0.7
LINC00643Q86TS7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 AL138724.1-201ENST00000606771 1088 ntBASIC10.69□□□□□ -0.7
LINC00643Q86TS7 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 AC041040.2-201ENST00000622926 2899 ntBASIC10.69□□□□□ -0.7
LINC00643Q86TS7 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
LINC00643Q86TS7 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC10.68□□□□□ -0.7
LINC00643Q86TS7 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC10.68□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms