Protein–RNA interactions for Protein: Q7Z3D4

LYSMD3, LysM and putative peptidoglycan-binding domain-containing protein 3, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3Q7Z3D4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 AL049840.3-201ENST00000602669 611 ntBASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 AL139424.1-201ENST00000607572 797 ntBASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 FAM215A-202ENST00000632077 792 ntBASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LYSMD3Q7Z3D4 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 AL031284.1-201ENST00000419297 478 ntBASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 AC012640.2-201ENST00000561606 901 ntBASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 MIR7706-201ENST00000613747 67 ntBASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 AC004706.3-202ENST00000621574 984 ntBASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.27■□□□□ 0.36
LYSMD3Q7Z3D4 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LYSMD3Q7Z3D4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.27■□□□□ 0.35
LYSMD3Q7Z3D4 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
LYSMD3Q7Z3D4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LYSMD3Q7Z3D4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.27■□□□□ 0.35
LYSMD3Q7Z3D4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LYSMD3Q7Z3D4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LYSMD3Q7Z3D4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.27■□□□□ 0.35
LYSMD3Q7Z3D4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LYSMD3Q7Z3D4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
LYSMD3Q7Z3D4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 ELK2BP-201ENST00000415014 1224 ntBASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 RNA5SP419-201ENST00000515908 135 ntBASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 AP001005.1-201ENST00000571755 1248 ntBASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 AC008735.5-201ENST00000623544 497 ntBASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 EGFEM1P-202ENST00000431685 1563 ntBASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 AD000864.1-201ENST00000624076 2295 ntBASIC17.26■□□□□ 0.35
LYSMD3Q7Z3D4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms