Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATL3Q6DD88 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
ATL3Q6DD88 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATL3Q6DD88 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATL3Q6DD88 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATL3Q6DD88 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
ATL3Q6DD88 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.62■□□□□ 0.73
ATL3Q6DD88 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 AP002414.1-201ENST00000391405 1147 ntBASIC19.61■□□□□ 0.73
ATL3Q6DD88 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATL3Q6DD88 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.61■□□□□ 0.73
ATL3Q6DD88 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 AL021920.2-201ENST00000624828 1351 ntBASIC19.6■□□□□ 0.73
ATL3Q6DD88 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 AC096582.2-201ENST00000510860 516 ntBASIC19.6■□□□□ 0.73
ATL3Q6DD88 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 AC148477.5-201ENST00000625164 1645 ntBASIC19.6■□□□□ 0.73
ATL3Q6DD88 LINC00895-201ENST00000629028 1637 ntBASIC19.6■□□□□ 0.73
ATL3Q6DD88 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 HLA-A-202ENST00000376806 1854 ntBASIC19.6■□□□□ 0.73
ATL3Q6DD88 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 CYP2T1P-202ENST00000641596 2535 ntBASIC19.6■□□□□ 0.73
ATL3Q6DD88 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.6■□□□□ 0.73
ATL3Q6DD88 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATL3Q6DD88 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.59■□□□□ 0.73
ATL3Q6DD88 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.59■□□□□ 0.73
ATL3Q6DD88 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 TOB2P1-201ENST00000469761 992 ntBASIC19.59■□□□□ 0.73
ATL3Q6DD88 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 AC092329.2-201ENST00000598402 547 ntBASIC19.59■□□□□ 0.73
ATL3Q6DD88 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.59■□□□□ 0.73
ATL3Q6DD88 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.59■□□□□ 0.73
ATL3Q6DD88 AC006449.5-201ENST00000610658 2098 ntBASIC19.59■□□□□ 0.73
ATL3Q6DD88 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
ATL3Q6DD88 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 DOC2GP-204ENST00000639052 2548 ntBASIC19.59■□□□□ 0.73
ATL3Q6DD88 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATL3Q6DD88 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
ATL3Q6DD88 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms