Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM3Q53GG5 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 KRT8P26-201ENST00000534154 1276 ntBASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 AC012615.1-201ENST00000565797 1299 ntBASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PDLIM3Q53GG5 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 NF2-208ENST00000403435 2568 ntTSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 DFFB-203ENST00000341385 572 ntTSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 LINC00265-3P-201ENST00000447588 903 ntBASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 PPIE-208ENST00000470213 927 ntTSL 3 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 MIR3917-201ENST00000580971 93 ntBASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 AL353801.3-201ENST00000609898 542 ntBASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms