Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.96■□□□□ 0.47
CHD9Q3L8U1 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.96■□□□□ 0.47
CHD9Q3L8U1 GNAQP1-201ENST00000444815 1067 ntBASIC17.96■□□□□ 0.47
CHD9Q3L8U1 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 MIR4259-201ENST00000584466 101 ntBASIC17.96■□□□□ 0.47
CHD9Q3L8U1 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
CHD9Q3L8U1 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.46
CHD9Q3L8U1 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 AL353732.1-201ENST00000569618 1459 ntBASIC17.95■□□□□ 0.46
CHD9Q3L8U1 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 RNU1-129P-201ENST00000384064 167 ntBASIC17.95■□□□□ 0.46
CHD9Q3L8U1 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 U1.21-201ENST00000580816 167 ntBASIC17.95■□□□□ 0.46
CHD9Q3L8U1 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 AP006294.1-201ENST00000415407 339 ntBASIC17.95■□□□□ 0.46
CHD9Q3L8U1 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHD9Q3L8U1 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 AL023806.1-201ENST00000603994 1649 ntBASIC17.94■□□□□ 0.46
CHD9Q3L8U1 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 AC098614.1-201ENST00000368528 745 ntBASIC17.94■□□□□ 0.46
CHD9Q3L8U1 CTBP2P3-201ENST00000585629 1255 ntBASIC17.94■□□□□ 0.46
CHD9Q3L8U1 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 AL109936.8-201ENST00000641772 604 ntBASIC17.94■□□□□ 0.46
CHD9Q3L8U1 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.94■□□□□ 0.46
CHD9Q3L8U1 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.94■□□□□ 0.46
CHD9Q3L8U1 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 WASH4P-201ENST00000564273 1246 ntBASIC17.93■□□□□ 0.46
CHD9Q3L8U1 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 AC073389.1-201ENST00000595595 795 ntBASIC17.93■□□□□ 0.46
CHD9Q3L8U1 AL512343.1-201ENST00000605837 169 ntBASIC17.93■□□□□ 0.46
CHD9Q3L8U1 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 SLC7A15P-201ENST00000424028 1363 ntBASIC17.93■□□□□ 0.46
CHD9Q3L8U1 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms