Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDH1Q08174 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDH1Q08174 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDH1Q08174 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.59■□□□□ 0.25
PCDH1Q08174 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDH1Q08174 AL355877.3-201ENST00000622820 899 ntBASIC16.59■□□□□ 0.25
PCDH1Q08174 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDH1Q08174 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDH1Q08174 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDH1Q08174 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDH1Q08174 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDH1Q08174 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDH1Q08174 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH1Q08174 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH1Q08174 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH1Q08174 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH1Q08174 AP002414.1-201ENST00000391405 1147 ntBASIC16.58■□□□□ 0.24
PCDH1Q08174 LINC00982-205ENST00000420957 435 ntBASIC16.58■□□□□ 0.24
PCDH1Q08174 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.58■□□□□ 0.24
PCDH1Q08174 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
PCDH1Q08174 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.58■□□□□ 0.24
PCDH1Q08174 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.58■□□□□ 0.24
PCDH1Q08174 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDH1Q08174 DUX4L17-201ENST00000557360 1267 ntBASIC16.58■□□□□ 0.24
PCDH1Q08174 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDH1Q08174 AL353135.1-201ENST00000606729 504 ntBASIC16.58■□□□□ 0.24
PCDH1Q08174 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDH1Q08174 AL022326.1-202ENST00000641533 845 ntBASIC16.58■□□□□ 0.24
PCDH1Q08174 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH1Q08174 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDH1Q08174 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH1Q08174 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH1Q08174 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDH1Q08174 AC097637.2-201ENST00000624096 1997 ntBASIC16.58■□□□□ 0.24
PCDH1Q08174 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH1Q08174 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PCDH1Q08174 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDH1Q08174 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH1Q08174 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH1Q08174 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PCDH1Q08174 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
PCDH1Q08174 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDH1Q08174 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.57■□□□□ 0.24
PCDH1Q08174 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDH1Q08174 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDH1Q08174 REXO1L6P-202ENST00000619970 1078 ntBASIC16.57■□□□□ 0.24
PCDH1Q08174 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDH1Q08174 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PCDH1Q08174 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PCDH1Q08174 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
PCDH1Q08174 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 AC105020.1-201ENST00000435356 2205 ntBASIC16.57■□□□□ 0.24
PCDH1Q08174 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PCDH1Q08174 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PCDH1Q08174 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH1Q08174 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PCDH1Q08174 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDH1Q08174 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH1Q08174 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDH1Q08174 AC011270.2-201ENST00000624293 2550 ntBASIC16.56■□□□□ 0.24
PCDH1Q08174 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PCDH1Q08174 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDH1Q08174 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PCDH1Q08174 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDH1Q08174 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDH1Q08174 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH1Q08174 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH1Q08174 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH1Q08174 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.56■□□□□ 0.24
PCDH1Q08174 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.56■□□□□ 0.24
PCDH1Q08174 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.56■□□□□ 0.24
PCDH1Q08174 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH1Q08174 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.56■□□□□ 0.24
PCDH1Q08174 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDH1Q08174 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.56■□□□□ 0.24
PCDH1Q08174 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
PCDH1Q08174 NKAPP1-205ENST00000585790 367 ntBASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms