Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
PKNOX1P55347 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PKNOX1P55347 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
PKNOX1P55347 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PKNOX1P55347 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PKNOX1P55347 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PKNOX1P55347 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PKNOX1P55347 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
PKNOX1P55347 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.91■□□□□ 0.3
PKNOX1P55347 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PKNOX1P55347 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
PKNOX1P55347 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.9■□□□□ 0.3
PKNOX1P55347 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
PKNOX1P55347 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.9■□□□□ 0.3
PKNOX1P55347 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PKNOX1P55347 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 AL049757.1-201ENST00000616842 1596 ntBASIC16.9■□□□□ 0.3
PKNOX1P55347 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.9■□□□□ 0.3
PKNOX1P55347 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
PKNOX1P55347 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PKNOX1P55347 DUX4L26-201ENST00000489078 1255 ntBASIC16.9■□□□□ 0.3
PKNOX1P55347 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.9■□□□□ 0.3
PKNOX1P55347 AL136038.3-201ENST00000561909 1096 ntBASIC16.9■□□□□ 0.3
PKNOX1P55347 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 AC011498.5-201ENST00000592027 486 ntBASIC16.9■□□□□ 0.3
PKNOX1P55347 AC005336.2-201ENST00000593183 939 ntBASIC16.9■□□□□ 0.3
PKNOX1P55347 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
PKNOX1P55347 IGHV3-41-201ENST00000613121 348 ntBASIC16.9■□□□□ 0.3
PKNOX1P55347 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
PKNOX1P55347 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
PKNOX1P55347 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PKNOX1P55347 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.9■□□□□ 0.3
PKNOX1P55347 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.9■□□□□ 0.3
PKNOX1P55347 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.9■□□□□ 0.3
PKNOX1P55347 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PKNOX1P55347 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PKNOX1P55347 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
PKNOX1P55347 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.89■□□□□ 0.3
PKNOX1P55347 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
PKNOX1P55347 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.89■□□□□ 0.29
PKNOX1P55347 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.89■□□□□ 0.29
PKNOX1P55347 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
PKNOX1P55347 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
PKNOX1P55347 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
PKNOX1P55347 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
PKNOX1P55347 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.89■□□□□ 0.29
PKNOX1P55347 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
PKNOX1P55347 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
PKNOX1P55347 AL845331.1-201ENST00000424978 1190 ntBASIC16.89■□□□□ 0.29
PKNOX1P55347 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.89■□□□□ 0.29
PKNOX1P55347 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.89■□□□□ 0.29
PKNOX1P55347 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.89■□□□□ 0.29
PKNOX1P55347 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.89■□□□□ 0.29
PKNOX1P55347 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.89■□□□□ 0.29
PKNOX1P55347 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
PKNOX1P55347 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PKNOX1P55347 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 PCDHA1-201ENST00000378133 2726 ntBASIC16.89■□□□□ 0.29
PKNOX1P55347 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PKNOX1P55347 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.89■□□□□ 0.29
PKNOX1P55347 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
PKNOX1P55347 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.88■□□□□ 0.29
PKNOX1P55347 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms